Mechanisms of alternative pre-messenger RNA splicing

DL Black - Annual review of biochemistry, 2003 - annualreviews.org
▪ Abstract Alternative pre-mRNA splicing is a central mode of genetic regulation in higher
eukaryotes. Variability in splicing patterns is a major source of protein diversity from the genome…

A post-transcriptional regulatory switch in polypyrimidine tract-binding proteins reprograms alternative splicing in developing neurons

…, K Ostrow, L Shiue, M Ares, DL Black - Genes & …, 2007 - genesdev.cshlp.org
Many metazoan gene transcripts exhibit neuron-specific splicing patterns, but the developmental
control of these splicing events is poorly understood. We show that the splicing of a …

[PDF][PDF] Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping

…, T Zhu, X Ji, YS Kwon, C Zhang, G Yeo, DL Black… - Molecular cell, 2009 - cell.com
Recent transcriptome analysis indicates that > 90% of human genes undergo alternative
splicing, underscoring the contribution of differential RNA processing to diverse proteomes in …

U2 as well as U1 small nuclear ribonucleoproteins are involved in premessenger RNA splicing

DL Black, B Chabot, JA Steitz - Cell, 1985 - cell.com
Two different experimental approaches have provided evidence that both U2 and Ul snRNPs
function in premRNA splicing. When the U2 snRNPs in a nuclear extract are selectively …

m6A mRNA modifications are deposited in nascent pre-mRNA and are not required for splicing but do specify cytoplasmic turnover

…, CB Vågbø, S Geula, JH Hanna, DL Black… - Genes & …, 2017 - genesdev.cshlp.org
Understanding the biologic role of N 6 -methyladenosine (m 6 A) RNA modifications in
mRNA requires an understanding of when and where in the life of a pre-mRNA transcript the …

The splicing regulator Rbfox1 (A2BP1) controls neuronal excitation in the mammalian brain

…, CH Lin, L Shiue, M Ares Jr, I Mody, DL Black - Nature …, 2011 - nature.com
The Rbfox family of RNA binding proteins regulates alternative splicing of many important
neuronal transcripts, but its role in neuronal physiology is not clear 1 . We show here that …

[HTML][HTML] Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology

DL Black - Cell, 2000 - cell.com
The human genome sequence can be thought of as a picture of the human organism. However,
like an impressionist painting, the genome is a very large canvas whose details become …

Neuronal regulation of alternative pre-mRNA splicing

Q Li, JA Lee, DL Black - Nature Reviews Neuroscience, 2007 - nature.com
Alternative pre-mRNA splicing has an important role in the control of neuronal gene expression.
Many neuronal proteins are structurally diversified through the differential inclusion and …

Structure of PTB bound to RNA: specific binding and implications for splicing regulation

…, L Reymond, B Amir-Ahmady, S Pitsch, DL Black… - Science, 2005 - science.org
The polypyrimidine tract binding protein (PTB) is a 58-kilodalton RNA binding protein involved
in multiple aspects of messenger RNA metabolism, including the repression of alternative …

[HTML][HTML] Transcript dynamics of proinflammatory genes revealed by sequence analysis of subcellular RNA fractions

…, AJ Tong, I Barozzi, MM Lissner, G Natoli, DL Black… - Cell, 2012 - cell.com
Macrophages respond to inflammatory stimuli by modulating the expression of hundreds of
genes in a defined temporal cascade, with diverse transcriptional and posttranscriptional …