Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

…, GM Garrity, JM Tiedje, JR Cole - Applied and …, 2007 - Am Soc Microbiol
The Ribosomal Database Project (RDP) Classifier, a naïve Bayesian classifier, can rapidly
and accurately classify bacterial 16S rRNA sequences into the new higher-order taxonomy …

Ribosomal Database Project: data and tools for high throughput rRNA analysis

JR Cole, Q Wang, JA Fish, B Chai… - Nucleic acids …, 2014 - academic.oup.com
Ribosomal Database Project (RDP; http://rdp.cme.msu.edu/ ) provides the research
community with aligned and annotated rRNA gene sequence data, along with tools to allow …

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

JR Cole, Q Wang, E Cardenas, J Fish… - Nucleic acids …, 2009 - academic.oup.com
The Ribosomal Database Project (RDP) provides researchers with quality-controlled bacterial
and archaeal small subunit rRNA alignments and analysis tools. An improved alignment …

The RDP (ribosomal database project) continues

BL Maidak, JR Cole, TG Lilburn… - Nucleic acids …, 2000 - academic.oup.com
The Ribosomal Database Project (RDP-II), previously described by Maidak et al., continued
during the past year to add new rRNA sequences to the aligned data and to improve the …

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis

JR Cole, B Chai, RJ Farris, Q Wang… - Nucleic acids …, 2005 - academic.oup.com
The Ribosomal Database Project (RDP-II) provides the research community with aligned
and annotated rRNA gene sequences, along with analysis services and a phylogenetically …

The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy

JR Cole, B Chai, TL Marsh, RJ Farris… - Nucleic acids …, 2003 - academic.oup.com
The Ribosomal Database Project-II (RDP-II) pro-vides data, tools and services related to
ribosomal RNA sequences to the research community. Through its website ( http://rdp.cme.msu.…

The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data

JR Cole, B Chai, RJ Farris, Q Wang… - Nucleic acids …, 2007 - academic.oup.com
Substantial new features have been implemented at the Ribosomal Database Project in
response to the increased importance of high-throughput rRNA sequence analysis in microbial …

Optical fiber sensor technology

…, A Dandridge, GH Sigel, JH Cole… - IEEE transactions on …, 1982 - ieeexplore.ieee.org
The current state of the art of optical fiber sensors is reviewed. The principles of operation
are detailed and the various types of fiber sensors are outlined. Achievable performance and …

In-feed antibiotic effects on the swine intestinal microbiome

…, TM Stedtfeld, B Chai, JR Cole… - Proceedings of the …, 2012 - National Acad Sciences
Antibiotics have been administered to agricultural animals for disease treatment, disease
prevention, and growth promotion for over 50 y. The impact of such antibiotic use on the …

A new version of the RDP (Ribosomal Database Project)

BL Maidak, JR Cole, CT Parker Jr… - Nucleic acids …, 1999 - academic.oup.com
The Ribosomal Database Project (RDP-II), previously described by Maidak et al. [Nucleic
Acids Res. (1997), 25, 109–111], is now hosted by the Center for Microbial Ecology at …