User profiles for P D Thomas
 | Paul D ThomasProfessor, University of Southern California Verified email at usc.edu Cited by 77244 |
The sequence of the human genome
…, L Chen, M Skupski, G Subramanian, PD Thomas… - science, 2001 - science.org
A 2.91-billion base pair (bp) consensus sequence of the euchromatic portion of the human
genome was generated by the whole-genome shotgun sequencing method. The 14.8-billion …
genome was generated by the whole-genome shotgun sequencing method. The 14.8-billion …
PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools
…, D Ebert, X Huang, PD Thomas - Nucleic acids …, 2019 - academic.oup.com
… Paul D Thomas Paul D Thomas … Huaiyu Mi, Anushya Muruganujan, Dustin Ebert, Xiaosong
Huang, Paul D Thomas, PANTHER version 14: more genomes, a new PANTHER GO-slim …
Huang, Paul D Thomas, PANTHER version 14: more genomes, a new PANTHER GO-slim …
PANTHER: a library of protein families and subfamilies indexed by function
In the genomic era, one of the fundamental goals is to characterize the function of proteins
on a large scale. We describe a method, PANTHER, for relating protein sequence …
on a large scale. We describe a method, PANTHER, for relating protein sequence …
InterPro in 2022
…, I Sillitoe, N Thanki, PD Thomas… - Nucleic acids …, 2023 - academic.oup.com
The InterPro database ( https://www.ebi.ac.uk/interpro/ ) provides an integrative classification
of protein sequences into families, and identifies functionally important domains and …
of protein sequences into families, and identifies functionally important domains and …
The InterPro protein families and domains database: 20 years on
…, I Sillitoe, N Thanki, PD Thomas… - Nucleic acids …, 2021 - academic.oup.com
The InterPro database ( https://www.ebi.ac.uk/interpro/ ) provides an integrative classification
of protein sequences into families, and identifies functionally important domains and …
of protein sequences into families, and identifies functionally important domains and …
PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements
…, H Tang, C Mills, D Kang, PD Thomas - Nucleic acids …, 2017 - academic.oup.com
The PANTHER database (Protein ANalysis THrough Evolutionary Relationships, http://pantherdb.org
) contains comprehensive information on the evolution and function of protein-…
) contains comprehensive information on the evolution and function of protein-…
Large-scale gene function analysis with the PANTHER classification system
… As all PANTHER pathways are in compliance with SBGN-PD, a typical reaction is a transition
of an input (or reactant) to an output (a product) controlled by a modifier (Fig. 3). The last …
of an input (or reactant) to an output (a product) controlled by a modifier (Fig. 3). The last …
PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API
… Paul D Thomas Paul D Thomas … Huaiyu Mi, Dustin Ebert, Anushya Muruganujan, Caitlin
Mills, Laurent-Philippe Albou, Tremayne Mushayamaha, Paul D Thomas, PANTHER version 16: …
Mills, Laurent-Philippe Albou, Tremayne Mushayamaha, Paul D Thomas, PANTHER version 16: …
InterPro: the integrative protein signature database
…, CJA Sigrist, M Thimma, PD Thomas… - Nucleic acids …, 2009 - academic.oup.com
The InterPro database ( http://www.ebi.ac.uk/interpro/ ) integrates together predictive models
or ‘signatures’ representing protein domains, families and functional sites from multiple, …
or ‘signatures’ representing protein domains, families and functional sites from multiple, …
Principles of protein folding—a perspective from simple exact models
General principles of protein structure, stability, and folding kinetics have recently been explored
in computer simulations of simple exact lattice models. These models represent protein …
in computer simulations of simple exact lattice models. These models represent protein …